- Anna Ticho House Museum
- Ammunition Hill National Memorial
- Armenian Museum
- Bible Lands Museum
- Bloomfield Science Museum
- Botanical Gardens of the Hebrew University
- The Burnt House
- Chagall Windows
- City of David
- The David Amar Worldwide North Africa Jewish Heritage Center
- David Palombo Museum
- Friends of Zionism Museum
- The Greek Orthodox Museum
- Gush Etzion Museum
- Hebrew Music Museum
- The Herzl Museum
- Islamic Museum of the Temple Mount
- The Israel Museum
- The Israelite Tower
- Jerusalem Artists' House
- Jerusalem Nature Museum
- The Menachem Begin Heritage Center
- Montefiore Museum
- Moshe Castel Museum of Art
- Museum of the Franciscan Convent
- Museum for Islamic Art
- Museum of Psalms
- Musical Instruments Museum
- The Museum on the Seam
- The Museum of Taxes
- Hebrew Music Museum
- Old Yishuv Court Museum
- Rabbi Kook Museum
- The Ramparts Walk
- Rockefeller Archaeological Museum
- Shai Agnon House
- Siebenberg House Museum
- Theatre Archives and Museum
- The Tower of David Museum
- The U. Nahon Museum of Italian Jewish Art
- Underground Prisoners Museum
- The Western Wall Tunnels
- Whol Archaeological Museum
- Wolfson Museum
- Yad La-Shiryon